CESSHIV-1 database

General information on HIV-1 isolate

# 1866

Accession number	EU047667
Name	07KYY4_3603
Subtype	B Korean
Country	South Korea
Sampling year	2007
Patient	KYY(KR4)

EU047667 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccatctgt tgtgtgactc tggtaactag agatccctca gacactttta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EU047662(#1863) EU047663(#1864)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy