CESSHIV-1 database

General information on HIV-1 isolate

# 1208

Accession number	EU293448
Name	99ZALT42
Subtype	C
Country	South Africa
Sampling year	1999
Patient	42

EU293448 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccaatttg gt-agtgtgga aaatctctag ca

Isolates with identical sequences of region:

AB254143(#806) AB254144(#807) AB254145(#808) AB254146(#809) AB254147(#810) AB254150(#813) AB254151(#814) AB254152(#815) AB254153(#816) AB254154(#817)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy