CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1112
Accession number EU693240
Name 06CM-BA-040
SubtypeCRF25_cpx
CountryCameroon
Sampling year 2006

EU693240 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

--ctgcttaagc ctcaataaag cttgccttga gagcttcaag tagtgtgtgc ccgtctgttg tgtgactctg gtaactagag atccctcaga ccactgtaga tattgt--aaaa tctctagca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy