CESSHIV-1 database

General information on HIV-1 isolate

# 3463

Accession number	EU807769
Name	Progressor_1c
Subtype	B
Country	USA
Submitted to NCBI	2008
Patient	P

EU807769 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccaattta gtcagtgtgg aaaatctcta gca

Isolates with identical sequences of region:

DQ295193(#570) EF370272(#2248) EF370334(#2260) EU047670(#1868) EU047672(#1869)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy