CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3478
Accession number FB675251
Name YBF30_patent
SubtypeGroup N
CountryFrance
Submitted to NCBI 1998
Patient30
CommentsPatent

FB675251 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcta-aa gtggtgtgtg cccatccatt cggtaactct ggtacctaga gatccctcag accatct-aga ctgagtgaaa aatctctagc a

Isolates with identical sequences of region:

AJ006022(#226)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012