CESSHIV-1 database

General information on HIV-1 isolate

# 2333

Accession number	FJ614908
Name	04LKD7_4080
Subtype	CRF02_AG
Country	South Korea (Ghana)
Sampling year	2004
Patient	LKD

FJ614908 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cgctgcttaa gcctcaataa agcttgcctt gagtgcttaa agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgcgta-a aaatctctag ca

Isolates with identical sequences of region:

FJ614898(#2329) FJ614906(#2332) FJ614914(#2337) FJ614918(#2340) FJ614920(#2342)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy