CESSHIV-1 database

General information on HIV-1 isolate

# 3432

Accession number	GQ222257
Name	c2008_32384
Subtype	B
Country	Germany
Sampling year	2008

GQ222257 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttatatt gtagtgcttc aagtagtgtg tgcccgtctg ttgtgtgact ctggtaacta gagatccctc agacctttat agtcagtgtg gaaaatctct agca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy