CESSHIV-1 database

General information on HIV-1 isolate

# 259

Accession number	U69589
Name	WCIPR clone 11
Subtype	B
Country	USA
Sampling year	1990
Patient	WC1-001

U69589 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccatttta gtcagtgagg aaaatctcta gca

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy