CESSHIV-1 database

General information on HIV-1 isolate

# 2572

Accession number	U81467
Name	VE14NEF
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	14

U81467 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccatttta gtccgtgtgg aaaatctcta gca

Isolates with identical sequences of region:

EU170138(#2972) EU170140(#2974) EU170146(#2788) EU170148(#2790) EU170149(#2791) EU170151(#2793) EU170154(#2796)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy