CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1104
Accession number A07116
Name MAL
SubtypeA1DK
Country
Submitted to NCBI 1988
PatientMAL
CommentsPatent

A07116 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagacggtg ta-aaaatctc tagcagtggc gcccgaacag ggactttaaa gtgaaagtaa cagggactcg aaagcggaag tt---ccagagaa gttctctcga cgcaggac

Isolates with identical sequences of region:

X04415(#167)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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