CESSHIV-1 database

General information on HIV-1 isolate

# 779

Accession number	AB253656
Name	pJPDR1873AE46
Subtype	CRF01_AE
Country	Japan
Sampling year	2000
Patient	DR1873

AB253656 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgtgtcagga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggacctgaaa gcgaaagtta atagggactc gaaagcgaaa gtt---ccagaga agttctctcg acgcaggac

Isolates with identical sequences of region:

AB253647(#770) AB253648(#771) AB253649(#772) AB253650(#773) AB253651(#774) AB253652(#775) AB253653(#776) AB253654(#777) AB253655(#778) AB253657(#780) AB253658(#781)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy