CESSHIV-1 database

General information on HIV-1 isolate

# 809

Accession number	AB254146
Name	p02ZM114C27
Subtype	C
Country	Zambia
Sampling year	2002
Patient	114

AB254146 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa aaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

AB254143(#806) AB254144(#807) AB254145(#808) AB254147(#810) AB254150(#813) AB254151(#814) AB254152(#815) AB254153(#816) AB254154(#817)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy