CESSHIV-1 database

General information on HIV-1 isolate

# 939

Accession number	AB286849
Name	p04JPDR5782C12
Subtype	CU
Country	Japan
Sampling year	2004
Patient	5782

AB286849 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacc-ttt tagtcagtgt ggaaaatctc tagcagtggc gcccgaacag ggacgcgaaa gcgaaagtaa aaccagagga gctctctcga cgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy