CESSHIV-1 database

General information on HIV-1 isolate

# 931

Accession number	AB287365
Name	p05JPDR6737B55
Subtype	B
Country	Japan
Sampling year	2005
Patient	NH2047

AB287365 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtccgtg tggaaaatct ctagcagtgg cgcctgaaca gggacctgaa aacgaaagcg gaaccggagc agctctctcg acgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy