CESSHIV-1 database

General information on HIV-1 isolate

# 2708

Accession number	AB480044
Name	p03GH194AG09
Subtype	02D
Country	Ghana
Sampling year	2003
Patient	GH194

AB480044 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt gtagtcactg tagaaaatct ctagcagtgg cgcccgaaca gggacttgaa agtaataggg actcgaaagc gaaagtt---cca gagaagttct ctcgacgcag ggac

Isolates with identical sequences of region:

AB480045(#2709) AB480046(#2710)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy