CESSHIV-1 database

General information on HIV-1 isolate

# 2717

Accession number	AB480692
Name	DR6174
Subtype	B
Country	Japan
Sampling year	2004
Patient	2013-0001

AB480692 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt taagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agtgaaagta agaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

AB480693(#2718)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy