CESSHIV-1 database

General information on HIV-1 isolate

# 2757

Accession number	AB485666
Name	BCF06
Subtype	Group O
Country	Cameroon
Sampling year	1994
Patient	BCF06

AB485666 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttca---accc tggtatctag agatccctca gatcacttag actgaagcag aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc gaaagtggaa ccagggaaga aaac-ctc-cga cgcaacgggc 

Isolates with identical sequences of region:

AB485667(#2758)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy