CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2759
Accession number AB485668
Name I_2478B
SubtypeGroup O
CountryUSA
Submitted to NCBI 2009
PatientI_2478B

AB485668 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttca---accc tggtatctag agatccctca gatcacttag actgagtgag aaaaatctct agcagtggcg cccgaacagg gacatgaaag agaaagtgaa accagggaag aaaac-ctc-cg acgcaacggg c

Isolates with identical sequences of region:

AB485669(#2760)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012