CESSHIV-1 database

General information on HIV-1 isolate

# 22

Accession number	AF004394
Name	AD8
Subtype	B
Country	USA
Sampling year	1986
Patient	ADA

AF004394 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agtgaaagta gaaccagaga agctctctcg acgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy