CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 125
Accession number AF110959
Name C-96BW01B03
SubtypeC
CountryBotswana
Sampling year 1996
Patient96BW01

AF110959 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac taaagatccc tcaaaccctt ttggtt-gtgt ggaaaatctc tagcagtggc gcccgaacag ggacctgaaa gcgaaagtaa gaccggagga gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012