CESSHIV-1 database

General information on HIV-1 isolate

# 129

Accession number	AF110963
Name	C-96BW04.07
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW04

AF110963 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt cgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agtgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy