CESSHIV-1 database

General information on HIV-1 isolate

# 1946

Accession number	AF239624
Name	PAIR8_INFANT
Subtype	D
Country	Tanzania
Sampling year	1996
Patient	8-child

AF239624 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtg--act ctggtaacta gagatccctc agacatcttt agtcagtgtg gaaaatctct agcagtggcg cccgaacagg gacttgaaag cgaaagtaga accagaggag ctctctcgac gcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy