CESSHIV-1 database

General information on HIV-1 isolate

# 1476

Accession number	AF254687
Name	NT16_2
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	16

AF254687 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtagc tagagatccc tcagacccct tttgtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy