CESSHIV-1 database

General information on HIV-1 isolate

# 1355

Accession number	AF413990
Name	98BY10443 clone 3-ltr
Subtype	CRF03_AB
Country	Belarus (Russia)
Sampling year	2000
Patient	BY10443

AF413990 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcagaccact ctagacggtg taaaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagtt ---ccagagaagt tctctcgacg caggac

Isolates with identical sequences of region:

AF413988(#1353) AF413989(#1354) AF414006(#286)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy