CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 225
Accession number AF423760
Name X558
SubtypeG
CountrySpain
Sampling year 2000
PatientX558

AF423760 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--ttgtgtgact ctggtaacta gagatccctc agaccactct agatagtgta -aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc gaaagttaac agggactcga aagcgaaagt t---ccagagaag ttctctcgac gcaggac

Isolates with identical sequences of region:

AF423756(#221) AF423757(#222)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy