CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 218
Accession number AF450096
Name X605
SubtypeCRF14_BG
CountrySpain
Sampling year 2000
PatientX605

AF450096 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--ttgtgtgact ctggtaacta gagatccctc agaccactct aaatagtgta -aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc gaaagttaac agggactcga aagcgaaagt t---ccagagaag ttctctcgac gcaggac

Isolates with identical sequences of region:

AF423758(#223)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012