CESSHIV-1 database

General information on HIV-1 isolate

# 1546

Accession number	AM076846
Name	PG56_55
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG56

AM076846 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtaa ctctggtaac taaagatccc tcaaactaaa agttgttagt gtggaaaatc tctagcagtg gcgcccgaac agggacctga aaacgaaagt agaaccagag aagatctctc gacgcaggac 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy