CESSHIV-1 database

General information on HIV-1 isolate

# 1577

Accession number	AM076875
Name	PG227_27
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG227

AM076875 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttatgtga ctctggtaac tagagatccc tcagacactt gtagtcagtg tggaaaatct ctagcagtgg cgcccgaaca ggtacttgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AM076872(#1574)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy