CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1989
Accession number AY118156
Name 94LB12
SubtypeCRF02_AG
CountryLiberia
Sampling year 1994
PatientLB12

AY118156 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaag ttaataggga ctcgaaagcg aaagtt---ccag agaagatctc tcgacgcaag gac

Isolates with identical sequences of region:

AY118161(#1992)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012