CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1419
Accession number AY118158
Name 93ZM45
SubtypeC
CountryZambia
Sampling year 1993
Patient93ZM45

AY118158 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctg tt-gtcagtgt ggaaaatctc taacagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012