CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 284
Accession number AY167123
Name CM237
Subtype01B
CountryThailand
Submitted to NCBI 2002
PatientCM237

AY167123 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccttg ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012