CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 303
Accession number AY169810
Name 96CMABB637
SubtypeGroup O
CountryCameroon
Sampling year 1996
Patient637

AY169810 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttca---accc tggtatctag agatccctca gatcacgtag actgaagcag aaaatctcta gcagtggcgc ccgaacaggg acttgaaagt gaaacc-aggg aagaaaa-c-ct c-cgacgcaac gggc

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy