CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 306
Accession number AY169813
Name 97CMABB447
SubtypeGroup O
CountryCameroon
Sampling year 1997
Patient447

AY169813 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttca---accc tggtaactag agatccctca gatcacgtag actgagcaga aaaatctcta gcagtggcgc ccgaacaggg accagaaagt gaaagtggaa ccagggaaga aaac-ctc-cga cgcaacgggc

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012