CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 353
Accession number AY314048
Name WC10P-6
SubtypeB
CountryCanada
Sampling year 1996
PatientWC10

AY314048 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttggggga ctctggtaac tagagatccc tcagactctt ttagtcagtg tggaagatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012