CESSHIV-1 database

General information on HIV-1 isolate

# 364

Accession number	AY314059
Name	WC10C-8
Subtype	B
Country	Canada
Sampling year	1996
Patient	WC10

AY314059 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AY314044(#349) AY314045(#350) AY314047(#352) AY314049(#354) AY314050(#355) AY314051(#356) AY314053(#358) AY314056(#361) AY314063(#368)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy