CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 377
Accession number AY322189
Name ML415-2-1997
SubtypeD
CountryKenya
Sampling year 1997
Patient415

AY322189 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacctct gtagtcagtg tg-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtag aaccagagga gctctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012