CESSHIV-1 database

General information on HIV-1 isolate

# 291

Accession number	AY423385
Name	671-00T169
Subtype	B
Country	Netherlands
Sampling year	2000
Patient	H671

AY423385 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttatgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AY423383(#289) AY423384(#290)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy