CESSHIV-1 database

General information on HIV-1 isolate

# 330

Accession number	AY463232
Name	C.ZA.1171MB
Subtype	C
Country	South Africa
Sampling year	2000
Patient	1171mother

AY463232 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy