CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1128
Accession number AY536233
Name CH3
SubtypeBF
CountryChile
Sampling year 2001
PatientCH3

AY536233 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--ttgtgtgact ctggtaacta gagatccctc agactatttt agtcagtgtg aaaaatctct agcagtggcg cccgaacagg gacccgaaag cgaaagtaga accagagaag atctctcgac gcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012