CESSHIV-1 database

General information on HIV-1 isolate

# 1421

Accession number	AY817688
Name	2102
Subtype	A
Country	Sweden
Submitted to NCBI	2004

AY817688 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttttgtga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaatgtt---c cagagaagaa gttctctcga cgctggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy