CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 423
Accession number AY838565
Name 1189MB
SubtypeC
CountrySouth Africa
Sampling year 2000
Patient1189M

AY838565 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg actctggtaa ctagagatcc ctcagaccct ttattggtag tgtggaaaaa tctctagcag tggcgcccga acagggactt gaaagcgaaa gtaagaccag agaagatctc tcgacgcagg ac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012