CESSHIV-1 database

General information on HIV-1 isolate

# 522

Accession number	AY878064
Name	03ZASK020B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-020

AY878064 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agtgt ggaaa-tctct agcagtggcg cccgaacagg gacctgaaag cgaaagtaag accagaggag atctctcgac gcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy