CESSHIV-1 database

General information on HIV-1 isolate

# 526

Accession number	AY878068
Name	03ZASK039B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-039

AY878068 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagtg agaccagaga agatctcccg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy