CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1424
Accession number AY900573
Name CB418
Subtype23A1
CountryCuba
Sampling year 2003
PatientCB418

AY900573 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--ttgtgtgact ctggtaacta gagatccctc agaccactct agactgtgta aaaaatctct agcagtggcg cccgaacagg gacttgaaag cgaaagttaa aagggactcg aaagcgaaag tt---ccagagaa gttctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012