CESSHIV-1 database

General information on HIV-1 isolate

# 428

Accession number	AY901965
Name	03ZASK011B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-011

AY901965 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaac tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy