CESSHIV-1 database

General information on HIV-1 isolate

# 443

Accession number	AY901980
Name	04ZASK174B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-174

AY901980 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy