CESSHIV-1 database

General information on HIV-1 isolate

# 450

Accession number	AY970947
Name	H434_8_F4
Subtype	B
Country	Netherlands
Sampling year	1986
Patient	H434

AY970947 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaaatc tctagcagtg gcgcccgaac agggacntga aagtgaaagt ataaccagag gagctctctc gacgcaggac 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy