CESSHIV-1 database

General information on HIV-1 isolate

# 466

Accession number	DQ011176
Name	03ZASK120B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-120

DQ011176 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtatc tagaggtccc tcagaccctt gtggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy