CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 754
Accession number DQ020274
Name CB134
SubtypeCRF20_BG
CountryCuba
Sampling year 2003
PatientCB134

DQ020274 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--ttgtgtgact ctggtaacta gagatccctc agaccactct agacagtgta -aaaatctcta gcagtggcgc ccgaacaggg acttgaaagt gaaagttaaa agggactcga aagcgaaagt t---ccagagaag ttctctcgac gcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012