CESSHIV-1 database

General information on HIV-1 isolate

# 478

Accession number	DQ056408
Name	03ZASK117B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-117-137

DQ056408 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttgg-cagtgt ggaaaatctc tagcagtggc gcccgaacag ggacctgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy